topomics

Topic modeling for single-cell and spatial multiomics.

These tutorials show how to run a trained topomics model on real multimodal datasets — loading the model from disk (training is shown inline but commented out) and inspecting the resulting topics. Dataset and model paths are read from a local, git-ignored config.yml (copy examples/config.example.yml).

Tutorials

• TEA-seq: topic modeling of a RNA + ATAC + protein PMBCs

Reference

• API
• Changelog
• Contributing guide