topomics.models.BaseTopicModel
==============================

.. currentmodule:: topomics.models

.. add toctree option to make autodoc generate the pages

.. autoclass:: BaseTopicModel



Attributes table
~~~~~~~~~~~~~~~~

.. autosummary::

    ~BaseTopicModel.spatial





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~BaseTopicModel.check_input
    ~BaseTopicModel.check_modalities_names
    ~BaseTopicModel.clear_metric_cache
    ~BaseTopicModel.cross_modality_score
    ~BaseTopicModel.fit
    ~BaseTopicModel.get_cell_topic_dist
    ~BaseTopicModel.get_entropy
    ~BaseTopicModel.get_feature_topic_dist
    ~BaseTopicModel.get_likelihood_per_modality
    ~BaseTopicModel.get_modality_weights
    ~BaseTopicModel.get_perplexity
    ~BaseTopicModel.get_perplexity_per_modality
    ~BaseTopicModel.get_top_features_per_topic
    ~BaseTopicModel.get_topic_diversity
    ~BaseTopicModel.predict





Attributes
~~~~~~~~~~



.. autoattribute:: BaseTopicModel.spatial






Methods
~~~~~~~



.. automethod:: BaseTopicModel.check_input

.. automethod:: BaseTopicModel.check_modalities_names

.. automethod:: BaseTopicModel.clear_metric_cache

.. automethod:: BaseTopicModel.cross_modality_score

.. automethod:: BaseTopicModel.fit

.. automethod:: BaseTopicModel.get_cell_topic_dist

.. automethod:: BaseTopicModel.get_entropy

.. automethod:: BaseTopicModel.get_feature_topic_dist

.. automethod:: BaseTopicModel.get_likelihood_per_modality

.. automethod:: BaseTopicModel.get_modality_weights

.. automethod:: BaseTopicModel.get_perplexity

.. automethod:: BaseTopicModel.get_perplexity_per_modality

.. automethod:: BaseTopicModel.get_top_features_per_topic

.. automethod:: BaseTopicModel.get_topic_diversity

.. automethod:: BaseTopicModel.predict